Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs34222442 chr16:1502338 C/T 1.97E-7 179 13.18 14.5 4 KM Plot
ESCA rs34252668 chr16:1506011 G/A 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs34296159 chr15:65610151 C/T 6.82E-5 183 12.87 17.48 4.08 KM Plot
ESCA rs34371706 chr15:67124454 G/A 9.86E-5 177 13.38 14.78 6 KM Plot
ESCA rs34442130 chr3:46024529 T/A 0 183 13.37 12.6 0.8 KM Plot
ESCA rs34555288 chr1:3701164 C/T 1.75E-12 183 13.03 16.4 2.27 KM Plot
ESCA rs34591216 chr16:1512979 T/C 6.03E-8 181 13.33 13.42 4 KM Plot
ESCA rs34620436 chr16:1508975 C/A 6.03E-8 181 13.33 13.42 4 KM Plot
ESCA rs34658788 chr14:70808845 T/C 5.48E-7 180 12.97 18.42 3.92 KM Plot
ESCA rs34737515 chr2:109354326 C/CCAT 1.11E-16 176 13.03 14.7 2.25 KM Plot
ESCA rs34914392 chr16:1517467 C/A 1.39E-8 183 13.37 13.1 4 KM Plot
ESCA rs34915053 chr16:1507000 T/C 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs35060373 chr10:126721261 T/C 3.63E-5 183 13.38 10.53 7.87 KM Plot
ESCA rs35126176 chr10:126734000 CTA/C 5.23E-5 184 13.37 12.6 5.8 KM Plot
ESCA rs35169286 chr1:3695667 C/T 2.49E-12 179 13.07 16.67 2.27 KM Plot